{"id":9397,"date":"2026-05-04T16:01:52","date_gmt":"2026-05-04T14:01:52","guid":{"rendered":"https:\/\/fhu-premimpact.org\/?post_type=publication&#038;p=9397"},"modified":"2026-06-05T16:05:38","modified_gmt":"2026-06-05T14:05:38","slug":"predicting-neonatal-infection-in-preterm-premature-rupture-of-membranes-with-vaginal-microbiology-and-metagenomics-a-prospective-cohort-study","status":"publish","type":"publication","link":"https:\/\/fhu-premimpact.org\/en\/publications\/predicting-neonatal-infection-in-preterm-premature-rupture-of-membranes-with-vaginal-microbiology-and-metagenomics-a-prospective-cohort-study\/","title":{"rendered":"Predicting neonatal infection in preterm premature rupture of membranes with vaginal microbiology and metagenomics: a prospective cohort study"},"content":{"rendered":"\n<h2 class=\"wp-block-heading\">Abstract<\/h2>\n\n\n\n<p><strong>Objective:<\/strong> Early-onset neonatal sepsis due to ascending infection is a potentially preventable complication of preterm premature rupture of membranes. Our objective was to determine whether the analysis of bacteria from vaginal swab samples is predictive of the risk of early-onset neonatal sepsis in preterm premature rupture of membranes.<\/p>\n\n\n\n<p><strong>Study design:<\/strong> In a prospective 3-center observational cohort, patients with preterm premature rupture of membranes were enrolled between 22 and 36 weeks of gestation + 6 days. Vaginal swab samples at delivery were analyzed using 2 different approaches, classical bacterial cultures and shotgun metagenomic sequencing analysis. A metagenomics score was constructed combining the characterization of the vaginal microbiome and the presence of pathogens and the optimal cutoff to predict early-onset neonatal sepsis was tested on a receiver operating curve.<\/p>\n\n\n\n<p><strong>Results:<\/strong> Five hundred sixty-three preterm premature rupture of membranes cases were enrolled, with 646 live-born neonates. Preterm premature rupture of membranes occurred&lt;32 weeks of gestation in 41.9% and deliveries were&lt;34 weeks of gestation in 41.0%. The incidence of early-onset neonatal sepsis was 29\/646 (4.5%). When considering all central and peripheral microbiological samples available for 26 neonates, the main pathogens isolated were Escherichia coli in 14 cases (53.8%), other gram-negatives in 5 (19.2%), strict anaerobes in 3 (11.5%); there was a single case (3.8%) each with Group B Streptococcus, Streptococcus anginosus, Staphylococcus aureus, and Ureaplasma urealyticum. We studied the prediction of early-onset neonatal sepsis among 272 mothers and their 310 neonates (20 early-onset neonatal sepsis, 6.4%) with both culture and metagenomic data available. A culture positive for a major or intermediate pathogen in the vaginal sample at delivery had a sensitivity of 80.0% (95% confidence interval=56.3-94.3) and a specificity of 37.9% (95% confidence interval=32.3-43.8), adjusted odds ratio of 1.6 (95% confidence interval [0.5-5.0]) to predict early-onset neonatal sepsis. The presence of E. coli was associated with an early-onset neonatal sepsis risk of 10.6% vs 4.9%, in the absence of E. coli (P=0.07). The metagenomics score was highly associated with early-onset neonatal sepsis, with an area under the receiver operating curve of 0.75 (95% confidence interval, 0.61-0.90). At the optimal cutoff value, sensitivity was 70% (95% confidence interval, 64%% to 95%), specificity was 85% (95% confidence interval, 81%% to 89%). A metagenomics score greater than 40 was associated with a significantly increased risk of early-onset neonatal sepsis with an adjusted odds ratio of 8.9 (95% confidence interval [3.5; 22.3]) in multivariate analysis adjusted for latency period and gestational age, P&lt;0.001.<\/p>\n\n\n\n<p><strong>Conclusion:<\/strong> In preterm premature rupture of membranes, conventional microbial culture of maternal vaginal samples was associated with early-onset neonatal sepsis, but its predictive values remain insufficient to guide perinatal care. Metagenomic microbial signatures improved predictive values. This opens the perspective for a rapid point-of-care test.<\/p>\n\n\n\n<p><strong>Keywords:<\/strong> Nugent score; ascending-route infection; bacterial culture; early-onset neonatal sepsis; metagenomics; pregnancy, preterm premature rupture of membranes (PPROM); vaginal microbiota; vaginal swab sampling.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Am J Obstet Gynecol .2026 May;234(5):1478 1493.<\/p>\n","protected":false},"featured_media":0,"template":"","class_list":["post-9397","publication","type-publication","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.6 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Predicting neonatal infection in preterm premature rupture of membranes with vaginal microbiology and metagenomics: a prospective cohort study - FHU Prem&#039;IMPACT<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/fhu-premimpact.org\/en\/publications\/predicting-neonatal-infection-in-preterm-premature-rupture-of-membranes-with-vaginal-microbiology-and-metagenomics-a-prospective-cohort-study\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Predicting neonatal infection in preterm premature rupture of membranes with vaginal microbiology and metagenomics: a prospective cohort study - 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